The saga continues: so I realized that the code signing template from the issuing CA was set to issue certs with the username in the subject line, rather than the server. I created a duplicate template for code signing and re-issued the certificate with the server name in it. Now, when I attempt to deploy the Software Publishing Certificate (even after a Refresh Update Server) nothing comes up in the dialog box. I have the cert in the WSUS Store, the Personal Store and the Trusted Root Store.
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